Detailed information of SNP:
|
SNP ID:
sf0601563966(Gbrowse)
Chromosome: chr06 Position: 1563966 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.35% | 36.65% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 12.47% | 87.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601563966 | A->T | LOC_Os06g03880(LOC_Os06g03880.1) | Non-Synonymous SNP |