Detailed information of SNP:
|
SNP ID:
sf0601586276(Gbrowse)
Chromosome: chr06 Position: 1586276 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 62.78% | 37.22% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 495 | 10.91% | 89.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 92 | 46.74% | 53.26% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601586276 | T->C | INTERGENIC | None |