Detailed information of SNP:
|
SNP ID:
sf0601602645(Gbrowse)
Chromosome: chr06 Position: 1602645 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 67.51% | 32.49% |
| All Indica | 799 | 61.20% | 38.80% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601602645 | G->T | INTERGENIC | None |