Detailed information of SNP:
|
SNP ID:
sf0601611839(Gbrowse)
Chromosome: chr06 Position: 1611839 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 96.70% | 3.30% |
| All Indica | 783 | 95.79% | 4.21% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 58 | 79.31% | 20.69% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 205 | 95.61% | 4.39% |
| Indica Intermediate | 203 | 89.16% | 10.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601611839 | G->C | INTERGENIC | None |