Detailed information of SNP:
|
SNP ID:
sf0601620820(Gbrowse)
Chromosome: chr06 Position: 1620820 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 95.98% | 4.02% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601620820 | A->G | INTERGENIC | None |