Detailed information of SNP:
|
SNP ID:
sf0601624011(Gbrowse)
Chromosome: chr06 Position: 1624011 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.09% | 42.91% |
| All Indica | 798 | 81.45% | 18.55% |
| All Japonica | 496 | 11.90% | 88.10% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 50.54% | 49.46% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601624011 | A->G | INTERGENIC | None |