Detailed information of SNP:
|
SNP ID:
sf0601634892(Gbrowse)
Chromosome: chr06 Position: 1634892 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 95.97% | 4.03% |
| All Indica | 796 | 97.11% | 2.89% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601634892 | T->C | LOC_Os06g04000(LOC_Os06g04000.1) | UTR_3_PRIME |