Detailed information of SNP:
|
SNP ID:
sf0601642651(Gbrowse)
Chromosome: chr06 Position: 1642651 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 93.81% | 6.19% |
| All Indica | 786 | 89.57% | 10.43% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 85.09% | 14.91% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 205 | 88.29% | 11.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601642651 | C->A | LOC_Os06g04020(LOC_Os06g04020.1) | Non-Synonymous SNP |