Detailed information of SNP:
|
SNP ID:
sf0601655132(Gbrowse)
Chromosome: chr06 Position: 1655132 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 96.12% | 3.88% |
| All Indica | 797 | 97.11% | 2.89% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601655132 | C->T | INTERGENIC | None |