Detailed information of SNP:
|
SNP ID:
sf0601767725(Gbrowse)
Chromosome: chr06 Position: 1767725 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 56.76% | 43.24% |
| All Indica | 795 | 90.06% | 9.94% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 72.17% | 27.83% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601767725 | T->C | LOC_Os06g04200(LOC_Os06g04200.4) | Synonymous |
| sf0601767725 | T->C | LOC_Os06g04200(LOC_Os06g04200.2) | Synonymous |
| sf0601767725 | T->C | LOC_Os06g04200(LOC_Os06g04200.3) | Synonymous |
| sf0601767725 | T->C | LOC_Os06g04200(LOC_Os06g04200.1) | Synonymous |