Detailed information of SNP:
|
SNP ID:
sf0601869519(Gbrowse)
Chromosome: chr06 Position: 1869519 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.20% | 48.80% |
| All Indica | 798 | 82.46% | 17.54% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 52.83% | 47.17% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601869519 | C->T | INTERGENIC | None |