Detailed information of SNP:
SNP ID:
sf0601869761(Gbrowse)
Chromosome: chr06 Position: 1869761 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1392 | 53.88% | 46.12% |
All Indica | 774 | 23.77% | 76.23% |
All Japonica | 497 | 99.80% | 0.20% |
Aus | 65 | 47.69% | 52.31% |
Indica I | 356 | 7.30% | 92.70% |
Indica II | 212 | 51.89% | 48.11% |
Indica Intermediate | 206 | 23.30% | 76.70% |
Temperate Japonica | 335 | 99.70% | 0.30% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0601869761 | T->C | INTERGENIC | None |