Detailed information of SNP:



SNP ID: sf0601869761(Gbrowse)

Chromosome: chr06

Position: 1869761
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1392 53.88% 46.12%
All Indica774 23.77% 76.23%
All Japonica497 99.80% 0.20%
Aus65 47.69% 52.31%
Indica I356 7.30% 92.70%
Indica II212 51.89% 48.11%
Indica Intermediate206 23.30% 76.70%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 59.52% 40.48%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0601869761 T->C INTERGENIC None