Detailed information of SNP:
|
SNP ID:
sf0601956362(Gbrowse)
Chromosome: chr06 Position: 1956362 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 81.71% | 18.29% |
| All Indica | 794 | 79.85% | 20.15% |
| All Japonica | 465 | 96.77% | 3.23% |
| Aus | 64 | 15.62% | 84.38% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 209 | 75.12% | 24.88% |
| Indica Intermediate | 210 | 72.86% | 27.14% |
| Temperate Japonica | 330 | 97.27% | 2.73% |
| Tropical Japonica | 78 | 94.87% | 5.13% |
| Japonica Intermediate | 57 | 96.49% | 3.51% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601956362 | T->A | INTERGENIC | None |