Detailed information of SNP:
|
SNP ID:
sf0601965865(Gbrowse)
Chromosome: chr06 Position: 1965865 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 91.98% | 8.02% |
| All Indica | 794 | 99.50% | 0.50% |
| All Japonica | 497 | 79.07% | 20.93% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 208 | 98.56% | 1.44% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 70.75% | 29.25% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601965865 | C->T | INTERGENIC | None |