Detailed information of SNP:
|
SNP ID:
sf0602119651(Gbrowse)
Chromosome: chr06 Position: 2119651 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 89.42% | 10.58% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 75.86% | 24.14% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 67.16% | 32.84% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602119651 | T->C | INTERGENIC | None |