Detailed information of SNP:
|
SNP ID:
sf0602129120(Gbrowse)
Chromosome: chr06 Position: 2129120 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1202 | 83.61% | 16.39% |
| All Indica | 597 | 67.67% | 32.33% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 100.00% | 0.00% |
| Indica I | 254 | 49.61% | 50.39% |
| Indica II | 169 | 76.92% | 23.08% |
| Indica Intermediate | 174 | 85.06% | 14.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602129120 | A->G | INTERGENIC | None |