Detailed information of SNP:
|
SNP ID:
sf0602223474(Gbrowse)
Chromosome: chr06 Position: 2223474 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1184 | 84.21% | 15.79% |
| All Indica | 601 | 70.72% | 29.28% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 42 | 92.86% | 7.14% |
| Indica I | 265 | 69.43% | 30.57% |
| Indica II | 169 | 64.50% | 35.50% |
| Indica Intermediate | 167 | 79.04% | 20.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 34 | 82.35% | 17.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602223474 | T->C | LOC_Os06g05040(LOC_Os06g05040.1) | Non-Synonymous SNP |