Detailed information of SNP:
|
SNP ID:
sf0602254306(Gbrowse)
Chromosome: chr06 Position: 2254306 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 97.74% | 2.26% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602254306 | C->A | LOC_Os06g05100(LOC_Os06g05100.4) | Non-Synonymous SNP |
| sf0602254306 | C->A | LOC_Os06g05100(LOC_Os06g05100.5) | Non-Synonymous SNP |
| sf0602254306 | C->A | LOC_Os06g05100(LOC_Os06g05100.1) | Non-Synonymous SNP |
| sf0602254306 | C->A | LOC_Os06g05100(LOC_Os06g05100.3) | Non-Synonymous SNP |
| sf0602254306 | C->A | LOC_Os06g05100(LOC_Os06g05100.2) | Non-Synonymous SNP |