Detailed information of SNP:
|
SNP ID:
sf0602312317(Gbrowse)
Chromosome: chr06 Position: 2312317 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 98.51% | 1.49% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 486 | 96.09% | 3.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 95.17% | 4.83% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602312317 | G->A | INTERGENIC | None |