Detailed information of SNP:
|
SNP ID:
sf0602321094(Gbrowse)
Chromosome: chr06 Position: 2321094 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1280 | 98.20% | 1.80% |
| All Indica | 664 | 96.54% | 3.46% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 304 | 93.75% | 6.25% |
| Indica II | 181 | 99.45% | 0.55% |
| Indica Intermediate | 179 | 98.32% | 1.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602321094 | G->A | LOC_Os06g05180(LOC_Os06g05180.3) | INTRON |
| sf0602321094 | G->A | LOC_Os06g05180(LOC_Os06g05180.1) | INTRON |
| sf0602321094 | G->A | LOC_Os06g05180(LOC_Os06g05180.4) | INTRON |
| sf0602321094 | G->A | LOC_Os06g05180(LOC_Os06g05180.2) | INTRON |