Detailed information of SNP:
|
SNP ID:
sf0602337470(Gbrowse)
Chromosome: chr06 Position: 2337470 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1228 | 95.60% | 4.40% |
| All Indica | 787 | 100.00% | 0.00% |
| All Japonica | 326 | 84.36% | 15.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 204 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 222 | 77.03% | 22.97% |
| Tropical Japonica | 61 | 100.00% | 0.00% |
| Japonica Intermediate | 43 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 34 | 94.12% | 5.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602337470 | T->A | INTERGENIC | None |