Detailed information of SNP:
|
SNP ID:
sf0602338250(Gbrowse)
Chromosome: chr06 Position: 2338250 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 57.54% | 42.46% |
| All Indica | 798 | 89.22% | 10.78% |
| All Japonica | 494 | 0.81% | 99.19% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602338250 | T->C | INTERGENIC | None |