Detailed information of SNP:
|
SNP ID:
sf0602400599(Gbrowse)
Chromosome: chr06 Position: 2400599 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.14% | 41.86% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 69.01% | 30.99% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602400599 | A->G | LOC_Os06g05340(LOC_Os06g05340.1) | INTRON |