Detailed information of SNP:
|
SNP ID:
sf0602415882(Gbrowse)
Chromosome: chr06 Position: 2415882 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 57.98% | 42.02% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602415882 | A->C | LOC_Os06g05359(LOC_Os06g05359.1) | UTR_3_PRIME |