Detailed information of SNP:
|
SNP ID:
sf0602465918(Gbrowse)
Chromosome: chr06 Position: 2465918 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 98.49% | 1.51% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 478 | 95.61% | 4.39% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 85.87% | 14.13% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602465918 | G->A | LOC_Os06g05460(LOC_Os06g05460.1) | Non-Synonymous SNP |