Detailed information of SNP:
|
SNP ID:
sf0602540655(Gbrowse)
Chromosome: chr06 Position: 2540655 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 54.41% | 45.59% |
| All Indica | 780 | 87.95% | 12.05% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 39 | 64.10% | 35.90% |
| Indica I | 368 | 98.37% | 1.63% |
| Indica II | 212 | 66.04% | 33.96% |
| Indica Intermediate | 200 | 92.00% | 8.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602540655 | T->C | INTERGENIC | None |