Detailed information of SNP:



SNP ID: sf0602597451(Gbrowse)

Chromosome: chr06

Position: 2597451
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 55.46% 44.54%
All Indica799 87.11% 12.89%
All Japonica497 0.20% 99.80%
Aus67 82.09% 17.91%
Indica I375 98.40% 1.60%
Indica II213 62.91% 37.09%
Indica Intermediate211 91.47% 8.53%
Temperate Japonica335 0.30% 99.70%
Tropical Japonica94 0.00% 100.00%
Japonica Intermediate68 0.00% 100.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 52.38% 47.62%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0602597451 C->T INTERGENIC None