Detailed information of SNP:
|
SNP ID:
sf0602597451(Gbrowse)
Chromosome: chr06 Position: 2597451 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.46% | 44.54% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602597451 | C->T | INTERGENIC | None |