Detailed information of SNP:
|
SNP ID:
sf0602641660(Gbrowse)
Chromosome: chr06 Position: 2641660 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.19% | 42.81% |
| All Indica | 799 | 88.24% | 11.76% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602641660 | A->G | LOC_Os06g05804(LOC_Os06g05804.3) | Synonymous |
| sf0602641660 | A->G | LOC_Os06g05804(LOC_Os06g05804.2) | Synonymous |
| sf0602641660 | A->G | LOC_Os06g05804(LOC_Os06g05804.1) | Synonymous |
| sf0602641660 | A->G | LOC_Os06g05804(LOC_Os06g05804.4) | Synonymous |