Detailed information of SNP:
|
SNP ID:
sf0602649492(Gbrowse)
Chromosome: chr06 Position: 2649492 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1304 | 98.08% | 1.92% |
| All Indica | 794 | 100.00% | 0.00% |
| All Japonica | 392 | 93.62% | 6.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 269 | 90.71% | 9.29% |
| Tropical Japonica | 73 | 100.00% | 0.00% |
| Japonica Intermediate | 50 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602649492 | C->T | INTERGENIC | None |