Detailed information of SNP:
|
SNP ID:
sf0602664097(Gbrowse)
Chromosome: chr06 Position: 2664097 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1310 | 92.90% | 7.10% |
| All Indica | 702 | 87.75% | 12.25% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 91.53% | 8.47% |
| Indica I | 316 | 86.08% | 13.92% |
| Indica II | 196 | 92.35% | 7.65% |
| Indica Intermediate | 190 | 85.79% | 14.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602664097 | T->C | INTERGENIC | None |