Detailed information of SNP:
|
SNP ID:
sf0602730258(Gbrowse)
Chromosome: chr06 Position: 2730258 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 98.66% | 1.34% |
| All Indica | 789 | 100.00% | 0.00% |
| All Japonica | 435 | 95.86% | 4.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 293 | 99.66% | 0.34% |
| Tropical Japonica | 79 | 88.61% | 11.39% |
| Japonica Intermediate | 63 | 87.30% | 12.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602730258 | C->T | INTERGENIC | None |