Detailed information of SNP:
|
SNP ID:
sf0602732916(Gbrowse)
Chromosome: chr06 Position: 2732916 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 56.95% | 43.05% |
| All Indica | 798 | 88.10% | 11.90% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602732916 | A->C | INTERGENIC | None |