Detailed information of SNP:
|
SNP ID:
sf0602768654(Gbrowse)
Chromosome: chr06 Position: 2768654 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 96.69% | 3.31% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602768654 | C->T | LOC_Os06g06014(LOC_Os06g06014.1) | Non-Synonymous SNP |
| sf0602768654 | C->T | LOC_Os06g06014(LOC_Os06g06014.2) | Non-Synonymous SNP |
| sf0602768654 | C->T | LOC_Os06g06014(LOC_Os06g06014.3) | Non-Synonymous SNP |
| sf0602768654 | C->T | LOC_Os06g06014(LOC_Os06g06014.4) | Non-Synonymous SNP |