Detailed information of SNP:
|
SNP ID:
sf0602810392(Gbrowse)
Chromosome: chr06 Position: 2810392 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.70% | 41.30% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 66.67% | 33.33% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602810392 | T->A | LOC_Os06g06090(LOC_Os06g06090.2) | INTRON |
| sf0602810392 | T->A | LOC_Os06g06090(LOC_Os06g06090.1) | INTRON |