Detailed information of SNP:
|
SNP ID:
sf0602853154(Gbrowse)
Chromosome: chr06 Position: 2853154 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 51.50% | 48.50% |
| All Indica | 798 | 78.07% | 21.93% |
| All Japonica | 484 | 2.27% | 97.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 212 | 64.62% | 35.38% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 322 | 1.55% | 98.45% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602853154 | C->T | INTERGENIC | None |