Detailed information of SNP:
|
SNP ID:
sf0602853651(Gbrowse)
Chromosome: chr06 Position: 2853651 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 50.74% | 49.26% |
| All Indica | 795 | 79.12% | 20.88% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 212 | 62.74% | 37.26% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602853651 | G->A | INTERGENIC | None |