Detailed information of SNP:
|
SNP ID:
sf0602860182(Gbrowse)
Chromosome: chr06 Position: 2860182 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 89.42% | 10.58% |
| All Indica | 798 | 85.71% | 14.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 85.29% | 14.71% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602860182 | C->G | LOC_Os06g06170(LOC_Os06g06170.1) | Non-Synonymous SNP |