Detailed information of SNP:
|
SNP ID:
sf0602900939(Gbrowse)
Chromosome: chr06 Position: 2900939 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 85.68% | 14.32% |
| All Indica | 798 | 84.34% | 15.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 85.83% | 14.17% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 67.30% | 32.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602900939 | T->C | INTERGENIC | None |