Detailed information of SNP:



SNP ID: sf0602900939(Gbrowse)

Chromosome: chr06

Position: 2900939
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1418 85.68% 14.32%
All Indica798 84.34% 15.66%
All Japonica497 100.00% 0.00%
Aus67 0.00% 100.00%
Indica I374 85.83% 14.17%
Indica II213 98.59% 1.41%
Indica Intermediate211 67.30% 32.70%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 85.71% 14.29%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0602900939 T->C INTERGENIC None