Detailed information of SNP:
|
SNP ID:
sf0602905215(Gbrowse)
Chromosome: chr06 Position: 2905215 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 87.64% | 12.36% |
| All Indica | 764 | 77.88% | 22.12% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 64.07% | 35.93% |
| Indica II | 201 | 88.06% | 11.94% |
| Indica Intermediate | 204 | 92.16% | 7.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602905215 | T->A | LOC_Os06g06280(LOC_Os06g06280.1) | INTRON |
| sf0602905215 | T->A | LOC_Os06g06280(LOC_Os06g06280.2) | INTRON |