Detailed information of SNP:
|
SNP ID:
sf0602908112(Gbrowse)
Chromosome: chr06 Position: 2908112 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1295 | 94.44% | 5.56% |
| All Indica | 722 | 95.43% | 4.57% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 24 | 25.00% | 75.00% |
| Indica I | 355 | 91.27% | 8.73% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 157 | 98.73% | 1.27% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602908112 | A->T | LOC_Os06g06290(LOC_Os06g06290.1) | INTRON |