Detailed information of SNP:
|
SNP ID:
sf0602929530(Gbrowse)
Chromosome: chr06 Position: 2929530 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 94.57% | 5.43% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602929530 | T->C | LOC_Os06g06310(LOC_Os06g06310.1) | Synonymous |