Detailed information of SNP:
|
SNP ID:
sf0602935124(Gbrowse)
Chromosome: chr06 Position: 2935124 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 56.43% | 43.57% |
| All Indica | 796 | 34.30% | 65.70% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 22.52% | 77.48% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 210 | 26.19% | 73.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602935124 | G->A | INTERGENIC | None |