Detailed information of SNP:
|
SNP ID:
sf0602957935(Gbrowse)
Chromosome: chr06 Position: 2957935 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 93.30% | 6.70% |
| All Indica | 788 | 88.20% | 11.80% |
| All Japonica | 479 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 84.32% | 15.68% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 208 | 87.02% | 12.98% |
| Temperate Japonica | 317 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602957935 | T->A | INTERGENIC | None |