Detailed information of SNP:
|
SNP ID:
sf0602960866(Gbrowse)
Chromosome: chr06 Position: 2960866 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 91.65% | 8.35% |
| All Indica | 789 | 85.55% | 14.45% |
| All Japonica | 479 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 83.83% | 16.17% |
| Indica II | 210 | 90.00% | 10.00% |
| Indica Intermediate | 208 | 84.13% | 15.87% |
| Temperate Japonica | 317 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602960866 | C->A | LOC_Os06g06360(LOC_Os06g06360.1) | INTRON |