Detailed information of SNP:
|
SNP ID:
sf0602990598(Gbrowse)
Chromosome: chr06 Position: 2990598 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 97.86% | 2.14% |
| All Indica | 787 | 96.44% | 3.56% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 371 | 97.04% | 2.96% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 203 | 94.58% | 5.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0602990598 | G->C | INTERGENIC | None |