Detailed information of SNP:
|
SNP ID:
sf0603021264(Gbrowse)
Chromosome: chr06 Position: 3021264 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 64.27% | 35.73% |
| All Indica | 797 | 46.93% | 53.07% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 38.24% | 61.76% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 210 | 36.19% | 63.81% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603021264 | A->C | INTERGENIC | None |