Detailed information of SNP:
|
SNP ID:
sf0603030632(Gbrowse)
Chromosome: chr06 Position: 3030632 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1138 | 92.44% | 7.56% |
| All Indica | 554 | 85.38% | 14.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 43 | 95.35% | 4.65% |
| Indica I | 233 | 84.55% | 15.45% |
| Indica II | 182 | 91.76% | 8.24% |
| Indica Intermediate | 139 | 78.42% | 21.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 9 | 77.78% | 22.22% |
| Intermediate | 35 | 97.14% | 2.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603030632 | C->T | INTERGENIC | None |