Detailed information of SNP:
|
SNP ID:
sf0603086534(Gbrowse)
Chromosome: chr06 Position: 3086534 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 56.26% | 43.74% |
| All Indica | 794 | 34.76% | 65.24% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 23.53% | 76.47% |
| Indica II | 211 | 62.56% | 37.44% |
| Indica Intermediate | 209 | 26.79% | 73.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603086534 | T->A | INTERGENIC | None |