Detailed information of SNP:
|
SNP ID:
sf0603087309(Gbrowse)
Chromosome: chr06 Position: 3087309 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 65.61% | 34.39% |
| All Indica | 743 | 48.86% | 51.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 7.94% | 92.06% |
| Indica I | 343 | 41.40% | 58.60% |
| Indica II | 209 | 70.33% | 29.67% |
| Indica Intermediate | 191 | 38.74% | 61.26% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603087309 | G->A | INTERGENIC | None |