Detailed information of SNP:
|
SNP ID:
sf0603116707(Gbrowse)
Chromosome: chr06 Position: 3116707 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 88.52% | 11.48% |
| All Indica | 740 | 91.76% | 8.24% |
| All Japonica | 496 | 82.46% | 17.54% |
| Aus | 43 | 97.67% | 2.33% |
| Indica I | 361 | 99.17% | 0.83% |
| Indica II | 212 | 75.00% | 25.00% |
| Indica Intermediate | 167 | 97.01% | 2.99% |
| Temperate Japonica | 335 | 81.79% | 18.21% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0603116707 | T->C | INTERGENIC | None |